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Pathogens and the immune system

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Viruses

Viruses range in size from 0.02µm to 0.3µm across, about 50 times smaller than the average bacterium. They are the smallest microorganisms. Viruses are not cells but they are a combination of genetic material and protein that can invade living cells. The viruses take over the biochemistry of the cells they invade to make more viruses. Since viruses can only reproduce as parasiteparasite
Organism that feeds off another living host and causes it some damage. An example of a parasite is a tapeworm that lives in the digestive system of a host organism.
s in the cells of other living organisms, most scientists class them as obligate intracellular parasitesobligate intracellular parasites
Organisms that can only exist as parasites in the cells of other living organisms.
.

The structure of viruses

Viruses are usually geometric shaped and have similar basic structures.

  • The capsid or protein coat is made up of simple repeating protein units known as capsomerescapsomeres
    Simple repeating protein units that make up the structure of the capsid (protein coat) of a virus.
    . This structure minimises the genetic material needed to code for coat production and simplifies assembling the protein coat in the host cell.
  • The genetic material is free within the virus. It may be DNA or RNA.
  • Some viruses have an outer lipid envelope, which is produced from the host cell. This makes it easier for the viruses to pass from cell to cell and may help them avoid the immune systemimmune system
    The body's natural defence mechanism against infectious diseases.
    .

Generalised structure of a virus

Classifying viruses

Viruses are classified by their genome and their mode of replication.

Type of virus Genetic material Mode of replication Examples
DNA viruses DNA Viral DNA acts directly as a template for both new viral DNA and for the mRNAs needed to synthesise viral proteins Adenoviruses that cause colds, bacteriophage that attack bacteriabacteria
Single-celled organism. Has a cell wall, cell membrane, cytoplasm. Its DNA is loosely-coiled in the cytoplasm and there is no distinct nucleus.
and varicella-zoster that causes chicken pox
RNA viruses RNA RNA acts as template for viral proteins either directly or indirectly Influenzainfluenza
A viral infection of the breathing system which attacks the lungs and can be fatal.
virus, measlesmeasles
Highly contagious disease caused by the measles virus. Symptoms usually include fever, often greater than 40°C, cough, and runny nose and last 7-10 days. These are accompanied by a red flat rash that starts on the face and extends to the rest of the body.
virus and tobacco mosaic virus
Retroviruses RNA Viral RNA controls production of reverse transcriptasereverse transcriptase
Viral enzyme in retroviruses that transcribes viral RNA into a DNA strand that can be used to direct the production of new virus particles.
. This makes DNA molecules corresponding to the viral RNA. They are transcribed to produce new viral proteins and a new viral genome.
Human immunodeficiency virus (HIV)

 

Bacteriophage is an example of a DNA virus. The capsid of a bacteriophage is 70-90nm of diameter.
(Photo credit: Dr Graham Beards)

The measlesmeasles
Highly contagious disease caused by the measles virus. Symptoms usually include fever, often greater than 40°C, cough, and runny nose and last 7-10 days. These are accompanied by a red flat rash that starts on the face and extends to the rest of the body.
virus is an RNA virus. Diameter of 120-250nm.
(Photo credit: CDC/Cynthia S.Goldsmith & William Bellini)

The human immunodeficiency virus (HIV) is a retrovirus. Diameter around 100nm.
(Photo credit: Wellcome Trust/ R.Dourmashkin).

Virus life cycles

As naturally occurring viruses invade and take over living cells to reproduce they all cause damage and disease of some sort. They can withstand drying and long periods of storage whilst maintaining their ability to infect cells.

How do viruses infect cells? They use several different methods:

  • Some viruses inject their genome into the host cell with most of the virus remaining outside
  • Some viruses are taken into the cell by endocytosisendocytosis
    Process by which cells take in substances by engulfing them in a vesicle.
     and the host digests the capsid, releasing the viral genome
  • The viral envelope may fuse with the host cell membranemembrane
    A thin, flexible sheet-like structure that acts as a lining or a boundary in an organism.
     releasing the rest of the virus into the cell
  • Plant viruses usually use a vector such as an aphid to get through the cell wall.

Chickenpox is caused by a virus
(Photo credit: CDC/NCIRD)

The life cycle depends on the type of virus. DNA viruses may go into a lysogenic pathwaylysogenic pathway
Reproductive route for DNA viruses where viral DNA is inserted into host DNA and replicated every time the host cell divides, without causing disease.
, when they steadily reproduce with the cells, or a lytic pathwaylytic pathway
Reproductive route for DNA viruses where viral DNA takes over the cell biochemistry and uses it to make new viruses, destroying the cell when the new viruses burst out and causing the symptoms of disease.
, when they become virulent and cause disease.